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Answered
Is There Any Specific Version Of Numpy You Recommend To Use With Clearml Python Library? I Am Building An Python Alpine Docker Image With Clearml==1.7.2 But It Breaks When Building Image From Dockerfile.

Is there any specific version of numpy you recommend to use with clearml Python library?

I am building an Python alpine docker image with clearml==1.7.2 but it breaks when building image from Dockerfile.

`
#13 25.33 copying psutil/tests/test_posix.py -> build/lib.linux-aarch64-cpython-39/psutil/tests
#13 25.33 copying psutil/tests/test_linux.py -> build/lib.linux-aarch64-cpython-39/psutil/tests
#13 25.33 copying psutil/tests/init.py -> build/lib.linux-aarch64-cpython-39/psutil/tests
#13 25.33 copying psutil/tests/test_process.py -> build/lib.linux-aarch64-cpython-39/psutil/tests
#13 25.33 copying psutil/tests/test_connections.py -> build/lib.linux-aarch64-cpython-39/psutil/tests
#13 25.33 running build_ext
#13 25.33 building 'psutil._psutil_linux' extension
#13 25.33 creating build/temp.linux-aarch64-cpython-39
#13 25.33 creating build/temp.linux-aarch64-cpython-39/psutil
#13 25.33 gcc -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -DTHREAD_STACK_SIZE=0x100000 -fPIC -DPSUTIL_POSIX=1 -DPSUTIL_SIZEOF_PID_T=4 -DPSUTIL_VERSION=593 -DPSUTIL_LINUX=1 -DPSUTIL_ETHTOOL_MISSING_TYPES=1 -I/usr/local/include/python3.9 -c psutil/_psutil_common.c -o build/temp.linux-aarch64-cpython-39/psutil/_psutil_common.o
#13 25.33 In file included from psutil/_psutil_common.c:9:
#13 25.33 /usr/local/include/python3.9/Python.h:11:10: fatal error: limits.h: No such file or directory
#13 25.33 11 | #include <limits.h>
#13 25.33 | ^~~~~~~~~~
#13 25.33 compilation terminated.
#13 25.33 error: command '/usr/bin/gcc' failed with exit code 1
#13 25.33 [end of output]
#13 25.33
#13 25.33 note: This error originates from a subprocess, and is likely not a problem with pip.
#13 25.33 ERROR: Failed building wheel for psutil
#13 25.33 Building wheel for PyYAML (pyproject.toml): started
#13 25.56 Building wheel for PyYAML (pyproject.toml): finished with status 'done'
#13 25.56 Created wheel for PyYAML: filename=PyYAML-6.0-cp39-cp39-linux_aarch64.whl size=45333 sha256=18840d64db3f15529278e3c074f389d9386b67c8e9f6cb0ffd325c744b0b6e97
#13 25.56 Stored in directory: /root/.cache/pip/wheels/5c/9d/5f/838ca730866969b9340acf232c4621bd398bc8be7cd6a5f838
#13 25.56 Successfully built PyYAML
#13 25.56 Failed to build numpy Pillow psutil
#13 25.56 ERROR: Could not build wheels for numpy, psutil, which is required to install pyproject.toml-based projects

executor failed running [/bin/sh -c /usr/local/bin/python3 -m pip install -r requirements.txt]: exit code: 1 `

  
  
Posted one year ago
Votes Newest

Answers 19


I need to use this image in kubernetes

  
  
Posted one year ago

this sounds like docker build issue on macos M1
https://pythonspeed.com/articles/docker-build-problems-mac/

  
  
Posted one year ago

Hi DrabCockroach54
This seems like a pip issue trying to install from source, try upgrading the pip version and before installing numpy, it should solve it 🤞

  
  
Posted one year ago

Do you have a specific numpy version you are installing ? why is it trying to install the wheel from code?

  
  
Posted one year ago

oh! my macos

  
  
Posted one year ago

this is why....

  
  
Posted one year ago

Yeah. M1 chip

  
  
Posted one year ago

so I think it depends if python:3.9-alpine use x86
which I believe it might be probably

  
  
Posted one year ago

😕 I will using docker_image python:3.9-alpine
I am running a basic python script. Need to use clearml to use it's API

  
  
Posted one year ago

Phew. Make sense. I am testing it by updating FROM in dockerfile.
Fingers crossed.

  
  
Posted one year ago

Still failing but I know the root cause though.

  
  
Posted one year ago

AgitatedDove14 I found it's the issue with pycryptodome 😕
Error started coming from here. Maybe specific version of it. Digging more.
#13 101.0 note: This error originates from a subprocess, and is likely not a problem with pip. #13 101.0 ERROR: Failed building wheel for pycryptodome #13 101.0 Running setup.py clean for pycryptodome #13 104.9 Building wheel for numpy (pyproject.toml): started #13 158.5 Building wheel for numpy (pyproject.toml): finished with status 'error' #13 158.8 error: subprocess-exited-with-error

  
  
Posted one year ago

Thanks

  
  
Posted one year ago

Oh found it:
temp.linux-aarch64-cpython-39this is Arm?!

  
  
Posted one year ago

FROM python:3.9-alpine

  
  
Posted one year ago

RUN apk update && apk upgrade --no-cache RUN /usr/local/bin/python3 -m pip install --upgrade pip RUN /usr/local/bin/python3 -m pip install -r requirements.txt

  
  
Posted one year ago

I'm assuming you are building for x86

  
  
Posted one year ago

AgitatedDove14 I am upgrade upgrading pip before this. 😕

  
  
Posted one year ago

DrabCockroach54 notice here there is no aarch64 wheel for anything other than python 3.5...
(and in both cases only py 3.5/3.6 builds, everything else will be built from code)
https://pypi.org/project/pycryptodome/#files

  
  
Posted one year ago
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19 Answers
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