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Answered
Hello All, I Installed Self-Hosted Server And Queue(Cosumes 1 Gpu) On Kubernetes. I Have An Issue Regarding Gpu Monitoring. I Checked The Process Is Using Gpu In The Pod, But Gpu Usage Is Not Being Displayed On Workers & Queues Dashboard, Whereas Cpu Usag

Hello all,
I installed self-hosted server and queue(cosumes 1 gpu) on kubernetes.
I have an issue regarding gpu monitoring.
I checked the process is using gpu in the pod, but gpu usage is not being displayed on WORKERS & QUEUES Dashboard, whereas CPU usage is. what is wrong?
image

  
  
Posted one year ago
Votes Newest

Answers 40


I tried using K8S_GLUE_POD_AGENT_INSTALL_ARGS=1.5.3rc2 instead of CLEARML_AGENT_UPDATE_VERSION=1.5.3rc2 , but it’s same. doesn’t read gpu usage.. 🥲
image

  
  
Posted one year ago

is that the working scenario?

  
  
Posted one year ago

@<1524922424720625664:profile|TartLeopard58> did you include the task log after setting the agent to v1.5.3rc2?

  
  
Posted one year ago

@<1523701087100473344:profile|SuccessfulKoala55> I realized that this is not an issue with the cloud or on-premise environment. it’s working well on gke but not working on eks. here is the log when i run “clearml-agent daemon --queue ~” command on eks

root@shelley-gpu-pod:/# clearml-agent daemon --queue shelley3
/usr/local/lib/python3.8/dist-packages/requests/init.py:109: RequestsDependencyWarning: urllib3 (2.0.1) or chardet (None)/charset_normalizer (3.1.0) doesn’t match a supported version!
warnings.warn(
Using environment access key CLEARML_API_ACCESS_KEY=“”
Using environment secret key CLEARML_API_SECRET_KEY=********
Current configuration (clearml_agent v1.5.2, location: None):

agent.worker_id =
agent.worker_name = shelley-gpu-pod
agent.force_git_ssh_protocol = false
agent.python_binary =
agent.package_manager.type = pip
agent.package_manager.pip_version.0 = <20.2 ; python_version < ‘3.10’
agent.package_manager.pip_version.1 = <22.3 ; python_version >= ‘3.10’
agent.package_manager.system_site_packages = false
agent.package_manager.force_upgrade = false
agent.package_manager.conda_channels.0 = pytorch
agent.package_manager.conda_channels.1 = conda-forge
agent.package_manager.conda_channels.2 = defaults
agent.package_manager.priority_optional_packages.0 = pygobject
agent.package_manager.torch_nightly = false
agent.package_manager.poetry_files_from_repo_working_dir = false
agent.venvs_dir = /root/.clearml/venvs-builds
agent.venvs_cache.max_entries = 10
agent.venvs_cache.free_space_threshold_gb = 2.0
agent.venvs_cache.path = ~/.clearml/venvs-cache
agent.vcs_cache.enabled = true
agent.vcs_cache.path = /root/.clearml/vcs-cache
agent.venv_update.enabled = false
agent.pip_download_cache.enabled = true
agent.pip_download_cache.path = /root/.clearml/pip-download-cache
agent.translate_ssh = true
agent.reload_config = false
agent.docker_pip_cache = /root/.clearml/pip-cache
agent.docker_apt_cache = /root/.clearml/apt-cache
agent.docker_force_pull = false
agent.default_docker.image = nvidia/cuda:10.2-cudnn7-runtime-ubuntu18.04
agent.enable_task_env = false
agent.hide_docker_command_env_vars.enabled = true
agent.hide_docker_command_env_vars.parse_embedded_urls = true
agent.abort_callback_max_timeout = 1800
agent.docker_internal_mounts.sdk_cache = /clearml_agent_cache
agent.docker_internal_mounts.apt_cache = /var/cache/apt/archives
agent.docker_internal_mounts.ssh_folder = ~/.ssh
agent.docker_internal_mounts.ssh_ro_folder = /.ssh
agent.docker_internal_mounts.pip_cache = /root/.cache/pip
agent.docker_internal_mounts.poetry_cache = /root/.cache/pypoetry
agent.docker_internal_mounts.vcs_cache = /root/.clearml/vcs-cache
agent.docker_internal_mounts.venv_build = ~/.clearml/venvs-builds
agent.docker_internal_mounts.pip_download = /root/.clearml/pip-download-cache
agent.apply_environment = true
agent.apply_files = true
agent.custom_build_script =
agent.disable_task_docker_override = false
agent.default_python = 3.8
agent.cuda_version = 110
agent.cudnn_version = 0
api.version = 1.5
api.verify_certificate = true
api.default_version = 1.5
api.http.max_req_size = 15728640
api.http.retries.total = 240
api.http.retries.connect = 240
api.http.retries.read = 240
api.http.retries.redirect = 240
api.http.retries.status = 240
api.http.retries.backoff_factor = 1.0
api.http.retries.backoff_max = 120.0
api.http.wait_on_maintenance_forever = true
api.http.pool_maxsize = 512
api.http.pool_connections = 512
api.http.default_method = post
api.api_server = “”
api.files_server = “”
api.web_server = “”
api.credentials.access_key = “”
sdk.storage.cache.default_base_dir = ~/.clearml/cache
sdk.storage.cache.size.min_free_bytes = 10GB
sdk.storage.direct_access.0.url = file://*
sdk.metrics.file_history_size = 100
sdk.metrics.matplotlib_untitled_history_size = 100
sdk.metrics.images.format = JPEG
sdk.metrics.images.quality = 87
sdk.metrics.images.subsampling = 0
sdk.metrics.tensorboard_single_series_per_graph = false
sdk.network.metrics.file_upload_threads = 4
sdk.network.metrics.file_upload_starvation_warning_sec = 120
sdk.network.iteration.max_retries_on_server_error = 5
sdk.network.iteration.retry_backoff_factor_sec = 10
sdk.aws.s3.key =
sdk.aws.s3.region =
sdk.aws.boto3.pool_connections = 512
sdk.aws.boto3.max_multipart_concurrency = 16
sdk.log.null_log_propagate = false
sdk.log.task_log_buffer_capacity = 66
sdk.log.disable_urllib3_info = true
sdk.development.task_reuse_time_window_in_hours = 72.0
sdk.development.vcs_repo_detect_async = true
sdk.development.store_uncommitted_code_diff = true
sdk.development.support_stopping = true
sdk.development.default_output_uri =
sdk.development.force_analyze_entire_repo = false
sdk.development.suppress_update_message = false
sdk.development.detect_with_pip_freeze = false
sdk.development.worker.report_period_sec = 2
sdk.development.worker.ping_period_sec = 30
sdk.development.worker.log_stdout = true
sdk.development.worker.report_global_mem_used = false

Worker “shelley-gpu-pod:gpuGPU-a8a68c42-d19b-c677-5fd3-889bdce415fb” - Listening to queues:
+----------------------------------+----------+-------+
| id | name | tags |
+----------------------------------+----------+-------+
| 1a63b1506e1d4ba4b6ca290a63eceb6b | shelley3 | |
+----------------------------------+----------+-------+

Running CLEARML-AGENT daemon in background mode, writing stdout/stderr to /tmp/.clearml_agent_daemon_outj1su2mo5.txt

  
  
Posted one year ago

root@shelley-gpu-pod:/# clearml-agent daemon --queue shelley2 --foreground
/usr/local/lib/python3.8/dist-packages/requests/init.py:109: RequestsDependencyWarning: urllib3 (2.0.2) or chardet (None)/charset_normalizer (3.1.0) doesn’t match a supported version!
warnings.warn(
Using environment access key CLEARML_API_ACCESS_KEY=“”
Using environment secret key CLEARML_API_SECRET_KEY=********
Current configuration (clearml_agent v1.5.2, location: None):

agent.worker_id =
agent.worker_name = shelley-gpu-pod
agent.force_git_ssh_protocol = false
agent.python_binary =
agent.package_manager.type = pip
agent.package_manager.pip_version.0 = <20.2 ; python_version < ‘3.10’
agent.package_manager.pip_version.1 = <22.3 ; python_version >= ‘3.10’
agent.package_manager.system_site_packages = false
agent.package_manager.force_upgrade = false
agent.package_manager.conda_channels.0 = pytorch
agent.package_manager.conda_channels.1 = conda-forge
agent.package_manager.conda_channels.2 = defaults
agent.package_manager.priority_optional_packages.0 = pygobject
agent.package_manager.torch_nightly = false
agent.package_manager.poetry_files_from_repo_working_dir = false
agent.venvs_dir = /root/.clearml/venvs-builds
agent.venvs_cache.max_entries = 10
agent.venvs_cache.free_space_threshold_gb = 2.0
agent.venvs_cache.path = ~/.clearml/venvs-cache
agent.vcs_cache.enabled = true
agent.vcs_cache.path = /root/.clearml/vcs-cache
agent.venv_update.enabled = false
agent.pip_download_cache.enabled = true
agent.pip_download_cache.path = /root/.clearml/pip-download-cache
agent.translate_ssh = true
agent.reload_config = false
agent.docker_pip_cache = /root/.clearml/pip-cache
agent.docker_apt_cache = /root/.clearml/apt-cache
agent.docker_force_pull = false
agent.default_docker.image = nvidia/cuda:10.2-cudnn7-runtime-ubuntu18.04
agent.enable_task_env = false
agent.hide_docker_command_env_vars.enabled = true
agent.hide_docker_command_env_vars.parse_embedded_urls = true
agent.abort_callback_max_timeout = 1800
agent.docker_internal_mounts.sdk_cache = /clearml_agent_cache
agent.docker_internal_mounts.apt_cache = /var/cache/apt/archives
agent.docker_internal_mounts.ssh_folder = ~/.ssh
agent.docker_internal_mounts.ssh_ro_folder = /.ssh
agent.docker_internal_mounts.pip_cache = /root/.cache/pip
agent.docker_internal_mounts.poetry_cache = /root/.cache/pypoetry
agent.docker_internal_mounts.vcs_cache = /root/.clearml/vcs-cache
agent.docker_internal_mounts.venv_build = ~/.clearml/venvs-builds
agent.docker_internal_mounts.pip_download = /root/.clearml/pip-download-cache
agent.apply_environment = true
agent.apply_files = true
agent.custom_build_script =
agent.disable_task_docker_override = false
agent.default_python = 3.8
agent.cuda_version = 110
agent.cudnn_version = 0
api.version = 1.5
api.verify_certificate = true
api.default_version = 1.5
api.http.max_req_size = 15728640
api.http.retries.total = 240
api.http.retries.connect = 240
api.http.retries.read = 240
api.http.retries.redirect = 240
api.http.retries.status = 240
api.http.retries.backoff_factor = 1.0
api.http.retries.backoff_max = 120.0
api.http.wait_on_maintenance_forever = true
api.http.pool_maxsize = 512
api.http.pool_connections = 512
api.http.default_method = post
api.api_server = “”
api.files_server = “”
api.web_server = “”
api.credentials.access_key = “”
sdk.storage.cache.default_base_dir = ~/.clearml/cache
sdk.storage.cache.size.min_free_bytes = 10GB
sdk.storage.direct_access.0.url = file://*
sdk.metrics.file_history_size = 100
sdk.metrics.matplotlib_untitled_history_size = 100
sdk.metrics.images.format = JPEG
sdk.metrics.images.quality = 87
sdk.metrics.images.subsampling = 0
sdk.metrics.tensorboard_single_series_per_graph = false
sdk.network.metrics.file_upload_threads = 4
sdk.network.metrics.file_upload_starvation_warning_sec = 120
sdk.network.iteration.max_retries_on_server_error = 5
sdk.network.iteration.retry_backoff_factor_sec = 10
sdk.aws.s3.key =
sdk.aws.s3.region =
sdk.aws.boto3.pool_connections = 512
sdk.aws.boto3.max_multipart_concurrency = 16
sdk.log.null_log_propagate = false
sdk.log.task_log_buffer_capacity = 66
sdk.log.disable_urllib3_info = true
sdk.development.task_reuse_time_window_in_hours = 72.0
sdk.development.vcs_repo_detect_async = true
sdk.development.store_uncommitted_code_diff = true
sdk.development.support_stopping = true
sdk.development.default_output_uri =
sdk.development.force_analyze_entire_repo = false
sdk.development.suppress_update_message = false
sdk.development.detect_with_pip_freeze = false
sdk.development.worker.report_period_sec = 2
sdk.development.worker.ping_period_sec = 30
sdk.development.worker.log_stdout = true
sdk.development.worker.report_global_mem_used = false

Worker “shelley-gpu-pod:gpuGPU-207fb7da-a426-da69-7b06-3bc1ec482b7e” - Listening to queues:
+----------------------------------+----------+-------+
| id | name | tags |
+----------------------------------+----------+-------+
| 2b8bfe0dc9ae4a9f9d7bd0dd4f00ae16 | shelley2 | |
+----------------------------------+----------+-------+

No tasks in queue 2b8bfe0dc9ae4a9f9d7bd0dd4f00ae16
No tasks in Queues, sleeping for 5.0 seconds

  
  
Posted one year ago

Hi @<1524922424720625664:profile|TartLeopard58> , how is the agent running? is it running in k8s as well?

  
  
Posted one year ago

here is the agent, task log file~!

  
  
Posted one year ago

any updates?..

  
  
Posted one year ago

Hi again 😊 @<1523701087100473344:profile|SuccessfulKoala55> sure!
image
image

  
  
Posted one year ago

@<1523701087100473344:profile|SuccessfulKoala55> yes. It only occurs when running on the cloud. It’s fine when running on-premises.

  
  
Posted one year ago

Can you share it?

  
  
Posted one year ago

I set CLEARML_AGENT_UPDATE_VERSION=1.5.3rc2 ` in agentk8sglue.basePodTemplate.env as i mentioned
image

  
  
Posted one year ago

Oh, It’s not the issue with eks.. We had the same issue on an on-premise cluster too(clearml-agent is installed). Could it be because of clearml-agent installed?

  
  
Posted one year ago

It also shows on project detail page.
image

  
  
Posted one year ago

heres is the log when executing with --foreground. but is there any difference?

  
  
Posted one year ago

Can you share the k8s logs of the pod running the agent? (not the task)

  
  
Posted one year ago

Try using K8S_GLUE_POD_AGENT_INSTALL_ARGS=1.5.3rc2

  
  
Posted one year ago

Yes

  
  
Posted one year ago

I run clearml-agent manually in gpu available pod using command clearml-agent daemon --queue shelley
and this doesn’t show gpu usage same with when i run task remotely

and here is the log

agent.worker_id =
agent.worker_name = shelley-gpu-pod
agent.force_git_ssh_protocol = false
agent.python_binary =
agent.package_manager.type = pip
agent.package_manager.pip_version.0 = <20.2 ; python_version < ‘3.10’
agent.package_manager.pip_version.1 = <22.3 ; python_version >= ‘3.10’
agent.package_manager.system_site_packages = false
agent.package_manager.force_upgrade = false
agent.package_manager.conda_channels.0 = pytorch
agent.package_manager.conda_channels.1 = conda-forge
agent.package_manager.conda_channels.2 = defaults
agent.package_manager.priority_optional_packages.0 = pygobject
agent.package_manager.torch_nightly = false
agent.package_manager.poetry_files_from_repo_working_dir = false
agent.venvs_dir = /root/.clearml/venvs-builds
agent.venvs_cache.max_entries = 10
agent.venvs_cache.free_space_threshold_gb = 2.0
agent.venvs_cache.path = ~/.clearml/venvs-cache
agent.vcs_cache.enabled = true
agent.vcs_cache.path = /root/.clearml/vcs-cache
agent.venv_update.enabled = false
agent.pip_download_cache.enabled = true
agent.pip_download_cache.path = /root/.clearml/pip-download-cache
agent.translate_ssh = true
agent.reload_config = false
agent.docker_pip_cache = /root/.clearml/pip-cache
agent.docker_apt_cache = /root/.clearml/apt-cache
agent.docker_force_pull = false
agent.default_docker.image = nvidia/cuda:10.2-cudnn7-runtime-ubuntu18.04
agent.enable_task_env = false
agent.hide_docker_command_env_vars.enabled = true
agent.hide_docker_command_env_vars.parse_embedded_urls = true
agent.abort_callback_max_timeout = 1800
agent.docker_internal_mounts.sdk_cache = /clearml_agent_cache
agent.docker_internal_mounts.apt_cache = /var/cache/apt/archives
agent.docker_internal_mounts.ssh_folder = ~/.ssh
agent.docker_internal_mounts.ssh_ro_folder = /.ssh
agent.docker_internal_mounts.pip_cache = /root/.cache/pip
agent.docker_internal_mounts.poetry_cache = /root/.cache/pypoetry
agent.docker_internal_mounts.vcs_cache = /root/.clearml/vcs-cache
agent.docker_internal_mounts.venv_build = ~/.clearml/venvs-builds
agent.docker_internal_mounts.pip_download = /root/.clearml/pip-download-cache
agent.apply_environment = true
agent.apply_files = true
agent.custom_build_script =
agent.disable_task_docker_override = false
agent.default_python = 3.8
agent.cuda_version = 110
agent.cudnn_version = 0
api.version = 1.5
api.verify_certificate = true
api.default_version = 1.5
api.http.max_req_size = 15728640
api.http.retries.total = 240
api.http.retries.connect = 240
api.http.retries.read = 240
api.http.retries.redirect = 240
api.http.retries.status = 240
api.http.retries.backoff_factor = 1.0
api.http.retries.backoff_max = 120.0
api.http.wait_on_maintenance_forever = true
api.http.pool_maxsize = 512
api.http.pool_connections = 512
api.http.default_method = post
api.api_server = “”
api.files_server = “”
api.web_server = “”
api.credentials.access_key = “”
sdk.storage.cache.default_base_dir = ~/.clearml/cache
sdk.storage.cache.size.min_free_bytes = 10GB
sdk.storage.direct_access.0.url = file://*
sdk.metrics.file_history_size = 100
sdk.metrics.matplotlib_untitled_history_size = 100
sdk.metrics.images.format = JPEG
sdk.metrics.images.quality = 87
sdk.metrics.images.subsampling = 0
sdk.metrics.tensorboard_single_series_per_graph = false
sdk.network.metrics.file_upload_threads = 4
sdk.network.metrics.file_upload_starvation_warning_sec = 120
sdk.network.iteration.max_retries_on_server_error = 5
sdk.network.iteration.retry_backoff_factor_sec = 10
sdk.aws.s3.key =
sdk.aws.s3.region =
sdk.aws.boto3.pool_connections = 512
sdk.aws.boto3.max_multipart_concurrency = 16
sdk.log.null_log_propagate = false
sdk.log.task_log_buffer_capacity = 66
sdk.log.disable_urllib3_info = true
sdk.development.task_reuse_time_window_in_hours = 72.0
sdk.development.vcs_repo_detect_async = true
sdk.development.store_uncommitted_code_diff = true
sdk.development.support_stopping = true
sdk.development.default_output_uri =
sdk.development.force_analyze_entire_repo = false
sdk.development.suppress_update_message = false
sdk.development.detect_with_pip_freeze = false
sdk.development.worker.report_period_sec = 2
sdk.development.worker.ping_period_sec = 30
sdk.development.worker.log_stdout = true
sdk.development.worker.report_global_mem_used = false

  
  
Posted one year ago

it is working on on-premise machine(i can see gpu usage on WORKERS & QUEUES Dashboard). but it is not working on cloud pod

  
  
Posted one year ago

Also, can you run it with --foreground and send the log again?

  
  
Posted one year ago

nope. just running “clearml-agent daemon --queue shelley”

  
  
Posted one year ago

sure! this one?

  
  
Posted one year ago

@<1523701087100473344:profile|SuccessfulKoala55> Okay..but how can i specify agent’s verison in helm chart?

  
  
Posted one year ago

Are there other people experiencing the same issue as me?

  
  
Posted one year ago

This is clearml-agent helm chart values.yaml file i used to install

  
  
Posted one year ago

@<1524922424720625664:profile|TartLeopard58> this might be related to the specific AMI/docker image in which the agent is running... can you use agent version v 1.5.3rc2 ?

  
  
Posted one year ago

This was so we can see the agent log

  
  
Posted one year ago

You can do that by passing the CLEARML_AGENT_UPDATE_VERSION=1.5.3rc2 env var

  
  
Posted one year ago

Is that the whole log?

  
  
Posted one year ago
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40 Answers
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one year ago
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