@<1523701205467926528:profile|AgitatedDove14> we've now configured the server to have it's own user account to run the agent so it is no longer running as root, but no luck π
Before os.environ
environ({'LANG': 'en_GB.UTF-8', 'PATH': '/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin', 'HOME': '/home/clearml', 'LOGNAME': 'clearml', 'USER': 'clearml', 'SHELL': '/bin/bash', 'INVOCATION_ID': 'da8e36a03c7348efbb7db360755e92b3', 'JOURNAL_STREAM': '8:244189055', 'SYSTEMD_EXEC_PID': '1970812', 'PYTHONUNBUFFERED': '1', 'CUDA_DEVICE_ORDER': 'PCI_BUS_ID', 'CLEARML_WORKER_ID': 'mrl-plswh100:0', 'TRAINS_WORKER_ID': 'mrl-plswh100:0', 'CLEARML_CONFIG_FILE': '/tmp/.clearml_agent.4ll2u471.cfg', 'TRAINS_CONFIG_FILE': '/tmp/.clearml_agent.4ll2u471.cfg', 'CLEARML_TASK_ID': '4ab4c22b02ed4d1f86ff4fac663828f0', 'TRAINS_TASK_ID': '4ab4c22b02ed4d1f86ff4fac663828f0', 'CLEARML_LOG_LEVEL': 'INFO', 'TRAINS_LOG_LEVEL': 'INFO', 'CLEARML_LOG_TASK_TO_BACKEND': '0', 'TRAINS_LOG_TASK_TO_BACKEND': '0', 'PYTHONPATH': '/home/clearml/.clearml/venvs-builds/3.9/task_repository/ml-queue-test:/home/clearml/.clearml/venvs-builds/3.9/task_repository/ml-queue-test::/usr/lib64/python39.zip:/usr/lib64/python3.9:/usr/lib64/python3.9/lib-dynload:/home/clearml/.clearml/venvs-builds/3.9/lib64/python3.9/site-packages:/home/clearml/.clearml/venvs-builds/3.9/lib/python3.9/site-packages'})
Before Task.init
Okay I have an idea, it could be a lock that another agent/user is holding on the cache folder or similar
Let me check something
My understanding is that on remote execution Task.init is supposed to be a no-op right?
Can this be reproducible using a simple script that we can also run?
Not really unfortunately - happy to share my code, but I've managed to reproduce this with different codebases.
As a summary of what I've tried:
- Agent on the H100 machine, Server on Kube - Fail
- Agent on laptop, Server on Kube - Fail
- Agent on laptop, Server on Docker Desktop - Pass
So I'm 100% sure there is something wrong with our ClearML Server deployment on Kube rather than an issue with the agents or code. As for which of the 7 containers could be at fault... :man-shrugging: . I'm not seeing anything out of the ordinary in the logs. Is there a verbose setting in the agent that could help us diagnose, i.e. each step of what goes on inTask.init?
Will try non-root and get back to you. Iβm also trying to reproduce on a different machine too
Although it's still really weird how it was failing silently
totally agree, I think the main issue was the agent had the correct configuration, but the container / env the agent was spinning was missing it,
I'll double check how come it did not print anything
My money is on the Redis container although comparing the logs between Kube & Docker Desktop, nothing looks out of the ordinary...
Hi @<1523701205467926528:profile|AgitatedDove14> , here's my code with some more prints:
from clearml import Task
print("Before Task.init")
task = Task.init(project_name="ClearML Testing", task_name="FMNIST")
print("Before task.set_repo")
task.set_repo(
repo="git@ssh.dev.azure.com:v3/mclarenracing/Application%20Engineering/ml-queue-test"
)
print("Before task.set_packages")
task.set_packages("requirements.txt")
print("After task")
print("Before import")
from pathlib import Path
import hydra
import lightning as L
import torch
from coolname import generate_slug
from omegaconf import DictConfig
from src.datasets import JobDataModule
from src.models import JobModel
from src.utils import LogSummaryCallback, get_num_steps, prepare_loggers_and_callbacks
print("After import")
I've attached the full log (using RC2). Still getting stuck at Task.init - very weird
Looking at the logs in the Kube pods now for anything that looks unusual...
Hi @<1724960464275771392:profile|DepravedBee82>
After
Starting Task Execution:
It will literally start the process running your code,
Can you send the full log of the Task? what is the code doing? which system is running the agent (i.e. Windows/Mac/Linux docker etc)
Yes the agent is running in venv mode afaik. As for why itβs running as root - Iβll ask our engineer β¦
If there was an SSL issue it should log to console right?
correct, also the agent is able to report, so I'm assuming configuration is correct
@<1724960464275771392:profile|DepravedBee82> could you try to put the clearml import + Task .init at the top of your code?
Thank you! Although it's still really weird how it was failing silently - would it be worth changing the logging level for that error somewhere?
Hmm no change after adding that unfortunately (confirmed that the change had been added by clearml-agent config ) π
I managed to set up my (Windows) laptop as a worker and reproduce the issue. Would that suggest an issue with ClearML server?
Our server is deployed on a kube cluster. I'm not too clear on how Helm charts etc. work, but if there are any obvious things we should check, let me know and I can ask our DevOps engineer
Ok so my train.py now looks like this:
print("Before import")
from pathlib import Path
import hydra
import lightning as L
import torch
from coolname import generate_slug
from omegaconf import DictConfig
from src.datasets import JobDataModule
from src.models import JobModel
from src.utils import LogSummaryCallback, get_num_steps, prepare_loggers_and_callbacks
from clearml import Task
for i in range(torch.cuda.device_count()):
print(torch.cuda.get_device_properties(i).name)
print("Before task")
task = Task.init(project_name="ClearML Testing", task_name="FMNIST")
task.set_repo(
repo="git@ssh.dev.azure.com:v3/mclarenracing/Application%20Engineering/ml-queue-test"
)
task.set_packages("requirements.txt")
print("After task")
And the log looks like this:
Starting Task Execution:
Before import
2024-07-19 09:06:09
NVIDIA H100 80GB HBM3
NVIDIA H100 80GB HBM3
NVIDIA H100 80GB HBM3
NVIDIA H100 80GB HBM3
NVIDIA H100 80GB HBM3
NVIDIA H100 80GB HBM3
NVIDIA H100 80GB HBM3
NVIDIA H100 80GB HBM3
Before task
So it looks like it's getting stuck at Task.init
Here's what the agent was logging:
ξ° anjum.sayed@M209886 ξ° ξ¬ ξ° clearml-agent --debug daemon --queue default
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): api.clearml.dev.mrl:443
DEBUG:urllib3.connectionpool:
"PUT /auth.login HTTP/1.1" 200 603
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): api.clearml.dev.mrl:443
DEBUG:urllib3.connectionpool:
"PUT /v2.5/queues.get_all HTTP/1.1" 200 344
DEBUG:urllib3.connectionpool:
"PUT /v2.5/queues.get_all HTTP/1.1" 200 332
DEBUG:urllib3.connectionpool:Starting new HTTPS connection (1): updates.clear.ml:443
DEBUG:clearml_agent.session:Run by interpreter: C:\Users\anjum.sayed\AppData\Local\Programs\Python\Python39\python.exe
Current configuration (clearml_agent v1.8.1, location: C:\Users\anjum.sayed/clearml.conf):
----------------------
agent.worker_id =
agent.worker_name = M209886
agent.force_git_ssh_protocol = true
agent.python_binary =
agent.package_manager.type = pip
agent.package_manager.pip_version.0 = <20.2 ; python_version < '3.10'
agent.package_manager.pip_version.1 = <22.3 ; python_version >\= '3.10'
agent.package_manager.system_site_packages = false
agent.package_manager.force_upgrade = false
agent.package_manager.conda_channels.0 = pytorch
agent.package_manager.conda_channels.1 = conda-forge
agent.package_manager.conda_channels.2 = nvidia
agent.package_manager.conda_channels.3 = defaults
agent.package_manager.priority_optional_packages.0 = pygobject
agent.package_manager.torch_nightly = false
agent.package_manager.poetry_files_from_repo_working_dir = false
agent.venvs_dir = C:/Users/anjum.sayed/.clearml/venvs-builds
agent.venvs_cache.max_entries = 10
agent.venvs_cache.free_space_threshold_gb = 2.0
agent.venvs_cache.path = ~/.clearml/venvs-cache
agent.vcs_cache.enabled = true
agent.vcs_cache.path = C:/Users/anjum.sayed/.clearml/vcs-cache
agent.venv_update.enabled = false
agent.pip_download_cache.enabled = true
agent.pip_download_cache.path = C:/Users/anjum.sayed/.clearml/pip-download-cache
agent.translate_ssh = true
agent.reload_config = false
agent.docker_pip_cache = C:/Users/anjum.sayed/.clearml/pip-cache
agent.docker_apt_cache = C:/Users/anjum.sayed/.clearml/apt-cache
agent.docker_force_pull = false
agent.default_docker.image = nvidia/cuda:11.0.3-cudnn8-runtime-ubuntu20.04
agent.enable_task_env = false
agent.sanitize_config_printout = ****
agent.hide_docker_command_env_vars.enabled = true
agent.hide_docker_command_env_vars.parse_embedded_urls = true
agent.abort_callback_max_timeout = 1800
agent.docker_internal_mounts.sdk_cache = /clearml_agent_cache
agent.docker_internal_mounts.apt_cache = /var/cache/apt/archives
agent.docker_internal_mounts.ssh_folder = ~/.ssh
agent.docker_internal_mounts.ssh_ro_folder = /.ssh
agent.docker_internal_mounts.pip_cache = /root/.cache/pip
agent.docker_internal_mounts.poetry_cache = /root/.cache/pypoetry
agent.docker_internal_mounts.vcs_cache = /root/.clearml/vcs-cache
agent.docker_internal_mounts.venv_build = ~/.clearml/venvs-builds
agent.docker_internal_mounts.pip_download = /root/.clearml/pip-download-cache
agent.apply_environment = true
agent.apply_files = true
agent.custom_build_script =
agent.disable_task_docker_override = false
agent.git_user =
agent.git_pass = ****
agent.git_host =
agent.debug = true
agent.default_python = 3.9
agent.cuda_version = 123
agent.cudnn_version = 0
api.version = 1.5
api.verify_certificate = true
api.default_version = 1.5
api.http.max_req_size = 15728640
api.http.retries.total = 240
api.http.retries.connect = 240
api.http.retries.read = 240
api.http.retries.redirect = 240
api.http.retries.status = 240
api.http.retries.backoff_factor = 1.0
api.http.retries.backoff_max = 120.0
api.http.wait_on_maintenance_forever = true
api.http.pool_maxsize = 512
api.http.pool_connections = 512
api.http.default_method = put
api.auth.token_expiration_threshold_sec = ****
api.api_server =
api.web_server =
api.files_server =
api.credentials.access_key = 1N33K4IXUYO64HVT4S3PXVDIX4K2CS
api.credentials.secret_key = ****
api.host =
sdk.storage.cache.default_base_dir = ~/.clearml/cache
sdk.storage.cache.size.min_free_bytes = 10GB
sdk.storage.direct_access.0.url = file://*
sdk.metrics.file_history_size = 100
sdk.metrics.matplotlib_untitled_history_size = 100
sdk.metrics.images.format = JPEG
sdk.metrics.images.quality = 87
sdk.metrics.images.subsampling = 0
sdk.metrics.tensorboard_single_series_per_graph = false
sdk.network.metrics.file_upload_threads = 4
sdk.network.metrics.file_upload_starvation_warning_sec = 120
sdk.network.iteration.max_retries_on_server_error = 5
sdk.network.iteration.retry_backoff_factor_sec = 10
sdk.network.file_upload_retries = 3
sdk.aws.s3.key =
sdk.aws.s3.secret = ****
sdk.aws.s3.region =
sdk.aws.s3.use_credentials_chain = false
sdk.aws.boto3.pool_connections = 512
sdk.aws.boto3.max_multipart_concurrency = 16
sdk.aws.boto3.multipart_threshold = 8388608
sdk.aws.boto3.multipart_chunksize = 8388608
sdk.log.null_log_propagate = false
sdk.log.task_log_buffer_capacity = 66
sdk.log.disable_urllib3_info = true
sdk.development.task_reuse_time_window_in_hours = 72.0
sdk.development.vcs_repo_detect_async = true
sdk.development.store_uncommitted_code_diff = true
sdk.development.support_stopping = true
sdk.development.default_output_uri =
sdk.development.force_analyze_entire_repo = false
sdk.development.suppress_update_message = false
sdk.development.detect_with_pip_freeze = false
sdk.development.worker.report_period_sec = 2
sdk.development.worker.ping_period_sec = 30
sdk.development.worker.log_stdout = true
sdk.development.worker.report_global_mem_used = false
sdk.development.worker.report_event_flush_threshold = 100
sdk.development.worker.console_cr_flush_period = 10
sdk.apply_environment = false
sdk.apply_files = false
DEBUG:clearml_agent.commands.worker:starting resource monitor thread
Worker "M209886:0" - Listening to queues:
+----------------------------------+---------+-------+
| id | name | tags |
+----------------------------------+---------+-------+
| 3e9973e15a6048c5ae5419ea7d097f9c | default | |
+----------------------------------+---------+-------+
DEBUG:urllib3.connectionpool:
"PUT /workers.register HTTP/1.1" 200 278
Running CLEARML-AGENT daemon in background mode, writing stdout/stderr to C:\Users\ANJUM~1.SAY\AppData\Local\Temp\.clearml_agent_daemon_outg5aq488v.txt
DEBUG:urllib3.connectionpool:
"PUT /v2.5/queues.get_all HTTP/1.1" 200 337
DEBUG:urllib3.connectionpool:
"PUT /workers.get_runtime_properties HTTP/1.1" 404 371
DEBUG:urllib3.connectionpool:
"PUT /v2.14/queues.get_next_task HTTP/1.1" 200 282
.................. truncating due to Slack char limit.........
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.5/tasks.ping HTTP/1.1" 200 271
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"POST /events.add_batch HTTP/1.1" 200 315
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /workers.status_report HTTP/1.1" 200 283
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /workers.status_report HTTP/1.1" 200 283
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.5/tasks.ping HTTP/1.1" 200 271
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.14/tasks.get_all HTTP/1.1" 200 363
DEBUG:urllib3.connectionpool:
"PUT /v2.5/tasks.get_by_id HTTP/1.1" 200 3490
DEBUG:urllib3.connectionpool:
"PUT /v2.5/tasks.stopped HTTP/1.1" 200 304
INFO:clearml_agent.commands.worker:Task process terminated
INFO:clearml_agent.commands.worker:Task interrupted: stopping
DEBUG:urllib3.connectionpool:
"POST /events.add_batch HTTP/1.1" 200 315
DEBUG:urllib3.connectionpool:
"PUT /v2.5/tasks.stopped HTTP/1.1" 200 333
DEBUG:urllib3.connectionpool:
"PUT /workers.status_report HTTP/1.1" 200 283
DEBUG:urllib3.connectionpool:
"PUT /v2.5/queues.get_all HTTP/1.1" 200 337
DEBUG:urllib3.connectionpool:
"PUT /v2.14/queues.get_next_task HTTP/1.1" 200 282
DEBUG:urllib3.connectionpool:
"PUT /workers.unregister HTTP/1.1" 200 280
DEBUG:urllib3.connectionpool:
"PUT /workers.unregister HTTP/1.1" 200 280
Retrying (Retry(total=239, connect=240, read=240, redirect=240, status=240)) after connection broken by 'SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1129)'))': /auth.login
OH that makes sense I'm assuming on your local machine the certificate is installed but not on remote machines / containers
Add the following to your clearml.conf:
api.verify_certificate: false
- Agent on laptop, Server on Kube - Fail
So I'm 100% sure there is something wrong with our ClearML Server deployment on Kube
Yeah that feels like a network config issue...
Is there a verbose setting in the agent that could help us diagnose,
yes running with debug turned on on.
since you managed to reproduce on your latop you can try to run the agent with --debug to test, specifically:
clearml-agent --debug daemon ....
if you are running it in venv mode (which I think the setup) you can also just specify the Task ID and test that (no daemon just execution)
clearml-agent --debug execute --id <task_id_here>
My understanding is that on remote execution Task.init is supposed to be a no-op right?
Not really a no-op, it would sync Argpasrer and the like, start background reporting services etc.
This is so odd! literally nothing printed
Can you tell me something about the node "mrl-plswh100:0" ?
is this like a sagemaker node? we have seen things similar where Python threads / subprocesses are not supported and instead of python crashing it just hangs there
I've added that flag, removed all PL loggers & callbacks and all references to Hydra, but no luck π
Sorry, on the remote machine (i.e. enqueue it and let the agent run it), this will also log the print π
This is exactly my problem, too, which I described above! If you find any solution, would be glad if you could share. π Of course, I also share mine when I get one.
@<1724960464275771392:profile|DepravedBee82> I just realized, the agent is Not running in docker mode, correct? (i.e. venv mode)
If this is the case how come it is running as root? (could it be is is running inside a container? how was that container spinned?)
Nope - confirmed to be running on the OS's Python environment,
okay so bare metal root is definitely not recommended.
I'm not sure how/why it get's stuck though π
Any chance you can run the agent as non-root?
Also maybe preferred in docker mode, so it is easier for you to control the environment of the Task
Ah yes you were right, it does still print on remote. Here you go:
environ({'LANG': 'en_GB.UTF-8', 'PATH': '/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin', 'HOME': '/root', 'LOGNAME': 'root', 'USER': 'root', 'SHELL': '/bin/bash', 'INVOCATION_ID': '2cf51dc43b78470cb14c29f5f653ee18', 'JOURNAL_STREAM': '8:224108', 'SYSTEMD_EXEC_PID': '134947', 'PYTHONUNBUFFERED': '1', 'CUDA_DEVICE_ORDER': 'PCI_BUS_ID', 'CLEARML_WORKER_ID': 'mrl-plswh100:0', 'TRAINS_WORKER_ID': 'mrl-plswh100:0', 'CLEARML_CONFIG_FILE': '/tmp/.clearml_agent.vw6k62pq.cfg', 'TRAINS_CONFIG_FILE': '/tmp/.clearml_agent.vw6k62pq.cfg', 'CLEARML_TASK_ID': 'b0abe1da01bd4539a8e06699141c893a', 'TRAINS_TASK_ID': 'b0abe1da01bd4539a8e06699141c893a', 'CLEARML_LOG_LEVEL': 'INFO', 'TRAINS_LOG_LEVEL': 'INFO', 'CLEARML_LOG_TASK_TO_BACKEND': '0', 'TRAINS_LOG_TASK_TO_BACKEND': '0', 'PYTHONPATH': '/root/.clearml/venvs-builds/3.9/task_repository/ml-queue-test:/root/.clearml/venvs-builds/3.9/task_repository/ml-queue-test::/usr/lib64/python39.zip:/usr/lib64/python3.9:/usr/lib64/python3.9/lib-dynload:/root/.clearml/venvs-builds/3.9/lib64/python3.9/site-packages:/root/.clearml/venvs-builds/3.9/lib/python3.9/site-packages'})