So far my local and remote gitlab repositories are synchronized, I suspect, that 

Failed applying git diff, see diff above

 error is caused by cached repository from which clearml tries to run the process. I've cleaned the cache, but it haven't helped.

Hmm can you test with empty "uncommitted changes" ?
Just making sure when you say still does n't work, you are not trying to run the Task with the git diff that includes teh binary data right?

Yes, but where I can find the file with the list of the packages to be installed? (edited)

What do you mean? The list of packages is exactly what you see in "installed packages" this is what the agent will install on the agent