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Answered
Hi All, I Was Trying To Use Clearml-Task To Run A Custom Docker(With Poetry To Install All The Python Dependencies And Activated The Environment) Using Clearml Gpu, But It Seems Like Clearml Always Create A Virtual Environment And Run The Python Script Fr

Hi all, I was trying to use clearml-task to run a custom docker(with poetry to install all the python dependencies and activated the environment) using clearml GPU, but it seems like clearml always create a virtual environment and run the python script from /root/.clearml/venvs-builds/3.10/bin/python . Is there a way that I can have the clearml-task to automatically activated a virtual environment use the activated custom virtual environment in my docker and run the scripts from there instead of always creating a new venv inheriting from the clearml system_site_packages? I noticed that clearml.conf has a configuration agent.docker_use_activated_venv , but I am not sure how to enable it from clearml-task

  
  
Posted 9 months ago
Votes Newest

Answers 38


Thanks @<1523701205467926528:profile|AgitatedDove14> . I just got an issue running clearml-task remotely, it has been working fine before today, but now every time I run clearml-task, it shows pending, and I've been waiting for 3 hours the status is still pending. The autoscalers was charging the hourly rate even though the task is still pending for 3 hours. From the console log of Clearml GPU instance, I saw it is listening to the queue, but there is no log even after 3 hours. There is nothing else I am running beside this one task, and seems like the worker never spin up again

2023-08-03 04:41:00,624 - clearml.Auto-Scaler - INFO - Spinning new instance resource='default', prefix='38ae71a80baf4a58893631d23c0c6e72_3090_1', queue='test-gpu'
2023-08-03 04:41:00,625 - clearml.Auto-Scaler - INFO - Creating instance for resource default
2023-08-03 04:41:01,027 - clearml.Auto-Scaler - INFO - New instance b97e702d-e2b3-4f28-adab-be59648601ea listening to test-gpu queue
  
  
Posted 9 months ago

Thanks for the detials @<1597762318140182528:profile|EnchantingPenguin77>

clearml.Auto-Scaler - INFO - New instance b97e702d-e2b3-4f28-adab-be59648601ea listening to test-gpu queue

This looks like a new agent was spined on your EC2 account, can you see it in the "Workers" page ?

  
  
Posted 9 months ago

# 

from typing import List, Optional, Tuple
import pyrootutils
import lightning
import hydra
from clearml import Task
from omegaconf import DictConfig, OmegaConf
from lightning import LightningDataModule, LightningModule, Trainer, Callback
from lightning.pytorch.loggers import Logger

pyrootutils.setup_root(__file__, indicator="pyproject.toml", pythonpath=True)
# ------------------------------------------------------------------------------------ #
# the setup_root above is equivalent to:
# - adding project root dir to PYTHONPATH
#       (so you don't need to force user to install project as a package)
#       (necessary before importing any local modules e.g. `from src import utils`)
# - setting up PROJECT_ROOT environment variable
#       (which is used as a base for paths in "configs/paths/default.yaml")
#       (this way all filepaths are the same no matter where you run the code)
# - loading environment variables from ".env" in root dir
#
# you can remove it if you:
# 1. either install project as a package or move entry files to project root dir
# 2. set `root_dir` to "." in "configs/paths/default.yaml"
#
# more info: 

# ------------------------------------------------------------------------------------ #

from src.utils.pylogger import get_pylogger
from src.utils.instantiators import instantiate_callbacks, instantiate_loggers

log = get_pylogger(__name__)


def train(cfg: DictConfig):
    # set seed for random number generators in pytorch, numpy and python.random
    if cfg.get("seed"):
        lightning.seed_everything(cfg.seed, workers=True)

    log.info(f"Instantiating datamodule <{cfg.data._target_}>")
    datamodule: LightningDataModule = hydra.utils.instantiate(cfg.data)

    log.info(f"Instantiating model <{cfg.model._target_}>")
    model: LightningModule = hydra.utils.instantiate(cfg.model)

    log.info("Instantiating callbacks...")
    callbacks: List[Callback] = instantiate_callbacks(cfg.get("callbacks"))

    log.info("Instantiating loggers...")
    logger: List[Logger] = instantiate_loggers(cfg.get("logger"))

    log.info(f"Instantiating trainer <{cfg.trainer._target_}>")
    trainer: Trainer = hydra.utils.instantiate(cfg.trainer, callbacks=callbacks, logger=logger)

    if cfg.get("train"):
        log.info("Starting training!")
        trainer.fit(model=model, datamodule=datamodule, ckpt_path=cfg.get("ckpt_path"))

    if cfg.get("test"):
        log.info("Starting testing!")
        ckpt_path = trainer.checkpoint_callback.best_model_path
        if ckpt_path == "":
            log.warning("Best ckpt not found! Using current weights for testing...")
            ckpt_path = None
        trainer.test(model=model, datamodule=datamodule, ckpt_path=ckpt_path)
        log.info(f"Best ckpt path: {ckpt_path}")


@hydra.main(version_base="1.3", config_path="../../configs", config_name="train.yaml")
def main(cfg: DictConfig):
    OmegaConf.set_struct(cfg, False)  # allow cfg to be mutable

    task = Task.init(project_name="fluoro-motion-detection", task_name="uniformer-test")
    logger = task.get_logger()
    logger.report_text("You can view your full hydra configuration under Configuration tab in the UI")
    print(OmegaConf.to_yaml(cfg))

    train(cfg)


if __name__ == "__main__":
    main()
  
  
Posted 9 months ago

I've added gpu:True to my hydra config file but the GPU is still not used

  
  
Posted 9 months ago

is it displaying that it is running anything?

  
  
Posted 9 months ago

There is nothing on the queue and worker
image

  
  
Posted 9 months ago

Actually never mind, it's working now!

  
  
Posted 9 months ago

I got the same cuda issue after being able to use GPU
image

  
  
Posted 9 months ago