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Unanswered
Hi. We Are Building A Pipeline. For This, We Try To Get Access To Artefacts From Preceding Tasks In The Pipeline, Via Their Task Id, Like Hpo_Task = Task.Get_Task(Task_Id=Hpo_Task_Id) But These Seem Not To Work Reliably, Presumably Because It Is Not Guara


def dataset_versioning(
pipe_task_id: str
):

import os
from clearml import Dataset, Task, TaskTypes

from src.main.python.pkautopilot.configuration import PipelineConfig
from src.main.python.pkautopilot.constants import (TRAIN_FILE_NAME, TEST_FILE_NAME, CLEARML_BUCKET,
                                                   SUBDIR_DATASETS, CLEARML_PIPELINE_VERSION_DATASET, CLEARML_DATASET_KEY,
                                                   AWS_ACCESS_KEY, SUBDIR_CONFIG, AWS_SECRET_ACCESS_KEY, AWS_DEFAULT_REGION)
from src.main.python.pkautopilot.exceptions import DataFolderError
from src.main.python.pkautopilot.helpers import get_tags

# helper function to check for local data sets
def data_sets_are_available(source):
    train_set_is_available = os.path.isfile(
        os.path.join(source, TRAIN_FILE_NAME))
    test_set_is_available = os.path.isfile(
        os.path.join(source, TEST_FILE_NAME))

    return train_set_is_available and test_set_is_available

# connect to current task to setup connection to our s3 bucket
print('task1_dataset_versioning: task started')
current_task = Task.current_task()
current_task.setup_aws_upload(bucket=CLEARML_BUCKET, subdir=SUBDIR_DATASETS,
                              key=AWS_ACCESS_KEY, secret=AWS_SECRET_ACCESS_KEY,
                              region=AWS_DEFAULT_REGION)

# connect to pipeline.config, linked by pipeline task who triggered the current task
try:
    print(f'task1_versioning -accessing pipeline task: {pipe_task_id}')
    pipeline_task = Task.get_task(task_id=pipe_task_id)
except Exception:
    print(f'failed accessing pipeline task with task id {pipe_task_id}')
    exit(-1)
# Download pipeline config
config_path = pipeline_task.artifacts["pipeline_config"].get_local_copy()
pipeline_config = PipelineConfig(config_path)
config = pipeline_config.config
# parsed_config = pipeline_config.parsed_config
project_name = config.meta.project_name
dataset_project_name = config.meta.dataset_project_name
path_to_datasets = config.data.dataset_source
dataset_id = config.data.dataset_id
dataset_source = config.data.dataset_source

tags = get_tags(config.data.crops,
                config.data.countries,
                config.data.tags)

current_task.set_name(CLEARML_PIPELINE_VERSION_DATASET)
current_task.set_project(project_name=project_name)
current_task.set_task_type(TaskTypes.data_processing)
current_task.set_tags(tags)

# if local data sets are mentioned in config yaml, try to use them
if dataset_id is None:
    if not data_sets_are_available(path_to_datasets):
        raise DataFolderError()
    print('found data sets locally')
    # Check for available data for current project
    existing_datasets = Dataset.list_datasets(partial_name=dataset_project_name,
                                              dataset_project=project_name, only_completed=True)

    final_list = []
    for item in existing_datasets:
        if Dataset.get(item['id']).is_final():
            final_list.append(item)
    existing_datasets = final_list

    # append to parent data if there is some in clearml
    existing_datasets.sort(key=lambda x: x["created"])
    if existing_datasets:
        # If the dataset already exists, update parent_ids
        parent_ids = [data["id"] for data in existing_datasets]
    else:
        parent_ids = []  # None

    # Create dataset object
    dataset = Dataset.create(
        dataset_name=dataset_project_name,
        dataset_project=project_name,
        dataset_tags=tags,
        parent_datasets=parent_ids,
        output_uri="s3://" + CLEARML_DATASET_KEY
    )
    # Sync data to it and finalize
    n_removed, n_added, n_edited = dataset.sync_folder(dataset_source)
    dataset.upload(output_url="s3://" + CLEARML_DATASET_KEY)

    dataset.finalize()
    dataset_id = dataset.id
print('task1 - upload')
current_task.upload_artifact("dataset_id", artifact_object=dataset_id, wait_on_upload=True)
return dataset_id
  
  
Posted 11 months ago
122 Views
0 Answers
11 months ago
11 months ago