Hi @<1547028074090991616:profile|ShaggySwan64>

. If I have a local repo cloned with ssh, the agent will attempt to replace the repo url with https,

Yes if you provide git user/pass (or user / app-pass) the agent would automatically replace and ssh:// repo link with the equivalent https:// and user the user/pass for authentication

but it seems that it doesn't remove the 2222 port in my case. That leads to

Hmm,,, what's the clearml-agent version? if this is not the latest 2.0.0rc2 could you test the latest and let us know if this issue persists ?
(because I think you are correct , it cannot assume it's the same port, my guess it just leaves it as is)