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Answered
What Sort Of Integration Is Possible With Clearml And Sagemaker? On The Page

What sort of integration is possible with ClearML and SageMaker? On the page describing ClearML Remote it says:

Create a remote development environment (e.g. AWS SageMaker, GCP CoLab, etc.) on any on-prem machine or any cloud.

But the only mention of SageMaker I see in the docs is the release notes for 0.13 saying "Add support for SageMaker".

I have SageMaker Studio up and running with access to my ClearML server and it's successfully able to log plots and scalars from experiments, but in terms of code it just logs the code used to launch the kernel:

"""Entry point for launching an IPython kernel.
This is separate from the ipykernel package so we can avoid doing imports until
after removing the cwd from sys.path.
"""
import sys

if __name__ == '__main__':
    # Remove the CWD from sys.path while we load stuff.
    # This is added back by InteractiveShellApp.init_path()
    if sys.path[0] == '':
        del sys.path[0]
    from ipykernel import kernelapp as app
    app.launch_new_instance()

Is it possible to capture more than that while using SageMaker?

  
  
Posted 2 years ago
Votes Newest

Answers 77


so my reading of the jupyter-kernel-gateway docs is that each session is containerized, so each notebook "session" is totally isolated

  
  
Posted 2 years ago

but even then the sessions endpoint is still empty

  
  
Posted 2 years ago

nice! Just tested it on my end as well, looks like it works!

  
  
Posted 2 years ago

Just ran the same notebook in a local Jupyter Lab session and it worked as I expected it might, saving a copy to Artifacts

  
  
Posted 2 years ago

So it's seemingly not the image, but maybe something to do with how Studio runs it as a kernel.

Yeah I think that for some reason it fails detecting this is actually jupyter noteboko (not really sure why), Thank you for double checking on the container !!

  
  
Posted 2 years ago

What do you have in "server_info['url']" ?

  
  
Posted 2 years ago

At the top there should be the URL of the notebook (I think)

  
  
Posted 2 years ago

Yep I think you are correct, you should have had the same output as a local jupyter notebook, and it seems that in sagemaker studio it is not working 😞
Let me check something

  
  
Posted 2 years ago

curious whether it impacts anything besides sagemaker. I'm thinking it's generically a kernel gateway issue, but I'm not sure if other platforms are using that yet

  
  
Posted 2 years ago

As another test I ran Jupyter Lab locally using the same custom Docker container that we're using for Sagemaker Studio, and it works great there, just like the native local Jupyter Lab. So it's seemingly not the image, but maybe something to do with how Studio runs it as a kernel.

  
  
Posted 2 years ago

and this

server_info['url'] = f"http://{server_info['hostname']}:{server_info['port']}/{server_info['base_url']}/"
  
  
Posted 2 years ago

if I use the same kernel there'll be two

  
  
Posted 2 years ago

I additionally tried using a Sagemaker Notebook instance, to see if it was the kernel dockerization that Studio uses that was messing things up. But it seems to actually log less information from a Notebook instance vs Studio .
image
image
image

  
  
Posted 2 years ago

seems like it's using None and that doesn't provide the normal api/sessions endpoint - or, it does, but returns an empty list

  
  
Posted 2 years ago

environ{'PYTHONNOUSERSITE': '0',
        'HOSTNAME': 'gfp-science-ml-t3-medium-d579233e8c4b53bc5ad626f2b385',
        'AWS_CONTAINER_CREDENTIALS_RELATIVE_URI': '/_sagemaker-instance-credentials/xxx',
        'JUPYTER_PATH': '/usr/share/jupyter/',
        'SAGEMAKER_LOG_FILE': '/var/log/studio/kernel_gateway.log',
        'PATH': '/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/tmp/miniconda3/condabin:/tmp/anaconda3/condabin:/tmp/miniconda2/condabin:/tmp/anaconda2/condabin',
        'REGION_NAME': 'us-east-1',
        'AWS_INTERNAL_IMAGE_OWNER': 'Custom',
        'AWS_DEFAULT_REGION': 'us-east-1',
        'PWD': '/home/sagemaker-user',
        'AWS_REGION': 'us-east-1',
        'SHLVL': '1',
        'HOME': '/home/sagemaker-user',
        'AWS_SAGEMAKER_PYTHONNOUSERSITE': '0',
        'AWS_ACCOUNT_ID': 'xxx',
        '_': '/opt/.sagemakerinternal/conda/bin/jupyter-kernelgateway',
        'LC_CTYPE': 'C.UTF-8',
        'KERNEL_LAUNCH_TIMEOUT': '40',
        'KERNEL_WORKING_PATH': '',
        'KERNEL_GATEWAY': '1',
        'JPY_PARENT_PID': '9',
        'PYDEVD_USE_FRAME_EVAL': 'NO',
        'TERM': 'xterm-color',
        'CLICOLOR': '1',
        'FORCE_COLOR': '1',
        'CLICOLOR_FORCE': '1',
        'PAGER': 'cat',
        'GIT_PAGER': 'cat',
        'MPLBACKEND': '
_inline'}
  
  
Posted 2 years ago

if I add the base_url it's not found

  
  
Posted 2 years ago

one possibility for getting the notebook filepath is finding and parsing /home/sagemaker-user/.jupyter/lab/workspaces/default-37a8.jupyterlab-workspace I think, but I don't know if I can tie that to a specific session

  
  
Posted 2 years ago
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