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Answered
What Sort Of Integration Is Possible With Clearml And Sagemaker? On The Page

What sort of integration is possible with ClearML and SageMaker? On the page describing ClearML Remote it says:

Create a remote development environment (e.g. AWS SageMaker, GCP CoLab, etc.) on any on-prem machine or any cloud.

But the only mention of SageMaker I see in the docs is the release notes for 0.13 saying "Add support for SageMaker".

I have SageMaker Studio up and running with access to my ClearML server and it's successfully able to log plots and scalars from experiments, but in terms of code it just logs the code used to launch the kernel:

"""Entry point for launching an IPython kernel.
This is separate from the ipykernel package so we can avoid doing imports until
after removing the cwd from sys.path.
"""
import sys

if __name__ == '__main__':
    # Remove the CWD from sys.path while we load stuff.
    # This is added back by InteractiveShellApp.init_path()
    if sys.path[0] == '':
        del sys.path[0]
    from ipykernel import kernelapp as app
    app.launch_new_instance()

Is it possible to capture more than that while using SageMaker?

  
  
Posted 2 years ago
Votes Newest

Answers 77


I've poked around both the internal URL that Jupyter kernel is running on and some of the files in /sagemaker/.jupyter but no luck so far - I can find plenty of kernel info, but not session

  
  
Posted 2 years ago

Hi LittleReindeer37
Yes you are correct it should capture the entire jupyter notebook in sagemaker studio.
Just verifying this is the use case, correct ?

  
  
Posted 2 years ago

At the top there should be the URL of the notebook (I think)

  
  
Posted 2 years ago

but the only exception handler is for requests.exceptions.SSLError

  
  
Posted 2 years ago

Hmm and you are getting empty list for thi one:

server_info['url'] = f"http://{server_info['hostname']}:{server_info['port']}/"
  
  
Posted 2 years ago

environ{'PYTHONNOUSERSITE': '0',
        'HOSTNAME': 'gfp-science-ml-t3-medium-d579233e8c4b53bc5ad626f2b385',
        'AWS_CONTAINER_CREDENTIALS_RELATIVE_URI': '/_sagemaker-instance-credentials/xxx',
        'JUPYTER_PATH': '/usr/share/jupyter/',
        'SAGEMAKER_LOG_FILE': '/var/log/studio/kernel_gateway.log',
        'PATH': '/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/tmp/miniconda3/condabin:/tmp/anaconda3/condabin:/tmp/miniconda2/condabin:/tmp/anaconda2/condabin',
        'REGION_NAME': 'us-east-1',
        'AWS_INTERNAL_IMAGE_OWNER': 'Custom',
        'AWS_DEFAULT_REGION': 'us-east-1',
        'PWD': '/home/sagemaker-user',
        'AWS_REGION': 'us-east-1',
        'SHLVL': '1',
        'HOME': '/home/sagemaker-user',
        'AWS_SAGEMAKER_PYTHONNOUSERSITE': '0',
        'AWS_ACCOUNT_ID': 'xxx',
        '_': '/opt/.sagemakerinternal/conda/bin/jupyter-kernelgateway',
        'LC_CTYPE': 'C.UTF-8',
        'KERNEL_LAUNCH_TIMEOUT': '40',
        'KERNEL_WORKING_PATH': '',
        'KERNEL_GATEWAY': '1',
        'JPY_PARENT_PID': '9',
        'PYDEVD_USE_FRAME_EVAL': 'NO',
        'TERM': 'xterm-color',
        'CLICOLOR': '1',
        'FORCE_COLOR': '1',
        'CLICOLOR_FORCE': '1',
        'PAGER': 'cat',
        'GIT_PAGER': 'cat',
        'MPLBACKEND': '
_inline'}
  
  
Posted 2 years ago

nice! Just tested it on my end as well, looks like it works!

  
  
Posted 2 years ago

lots of things like {"__timestamp__": "2023-02-23T23:49:23.285946Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0007679462432861328, "method": "GET", "uri": "/api/kernels/6ba227af-ff2c-4b20-89ac-86dcac95e2b2", "status": 200}

  
  
Posted 2 years ago

What happens when you call:

from clearml.backend_interface.task.repo import ScriptInfo

print(ScriptInfo._ScriptInfo__legacy_jupyter_notebook_server_json_parsing(None))
  
  
Posted 2 years ago

but the call to jupyter_server.serverapp.list_running_servers() does return the server

  
  
Posted 2 years ago

the problem is here: None

  
  
Posted 2 years ago

As another test I ran Jupyter Lab locally using the same custom Docker container that we're using for Sagemaker Studio, and it works great there, just like the native local Jupyter Lab. So it's seemingly not the image, but maybe something to do with how Studio runs it as a kernel.

  
  
Posted 2 years ago

This is strange, let me see if we can get around it, because I'm sure it worked 🙂

  
  
Posted 2 years ago

I additionally tried using a Sagemaker Notebook instance, to see if it was the kernel dockerization that Studio uses that was messing things up. But it seems to actually log less information from a Notebook instance vs Studio .
image
image
image

  
  
Posted 2 years ago

if there are any tests/debugging you'd like me to try, just let me know

  
  
Posted 2 years ago

sh-4.2$ cat /var/log/studio/kernel_gateway.log | head -n10
{"__timestamp__": "2023-02-23T21:48:28.036559Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0012829303741455078, "method": "GET", "uri": "/api", "status": 200}
{"__timestamp__": "2023-02-23T21:48:39.111068Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0012879371643066406, "method": "GET", "uri": "/api/kernels", "status": 200}
{"__timestamp__": "2023-02-23T21:48:39.116324Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0007715225219726562, "method": "GET", "uri": "/api/terminals", "status": 200}
{"__timestamp__": "2023-02-23T21:48:39.272822Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0007491111755371094, "method": "GET", "uri": "/api/terminals", "status": 200}
{"__timestamp__": "2023-02-23T21:48:43.000795Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 2.539133071899414, "method": "POST", "uri": "/api/kernels", "status": 201}
{"__timestamp__": "2023-02-23T21:48:43.073568Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0013430118560791016, "method": "GET", "uri": "/api/kernels/6ba227af-ff2c-4b20-89ac-86dcac95e2b2", "status": 200}
{"__timestamp__": "2023-02-23T21:48:43.469751Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0013761520385742188, "method": "GET", "uri": "/api/kernels/6ba227af-ff2c-4b20-89ac-86dcac95e2b2", "status": 200}
{"__timestamp__": "2023-02-23T21:48:43.702549Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0013780593872070312, "method": "GET", "uri": "/api/kernels/6ba227af-ff2c-4b20-89ac-86dcac95e2b2", "status": 200}
{"__timestamp__": "2023-02-23T21:48:43.986808Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.0007445812225341797, "method": "GET", "uri": "/api/kernels/6ba227af-ff2c-4b20-89ac-86dcac95e2b2", "status": 200}
{"__timestamp__": "2023-02-23T21:48:43.992860Z", "__schema__": "sagemaker.kg.request.schema", "__schema_version__": 1, "__metadata_version__": 1, "account_id": "", "duration": 0.001028299331665039, "method": "GET", "uri": "/api/kernels", "status": 200}
  
  
Posted 2 years ago

and cat /var/log/studio/kernel_gateway.log | grep ipynb comes up empty

  
  
Posted 2 years ago

image

  
  
Posted 2 years ago

. I'm thinking it's generically a kernel gateway issue, but I'm not sure if other platforms are using that yet

The odd thing is that you can access the notebook, but it returns zero kernels ..

  
  
Posted 2 years ago

I think it just ends up in /home/sagemaker-user/{notebook}.ipynb every time

  
  
Posted 2 years ago

if I change it to 0.0.0.0 it works

  
  
Posted 2 years ago

local Jupyter Lab:
image
image
image

  
  
Posted 2 years ago

if I instead change the request url to f"http://{server_info['hostname']}:{server_info['port']}/api/sessions" then it gets a 200 response... however , the response is an empty list

  
  
Posted 2 years ago

the server_info is

[{'base_url': '/jupyter/default/',
  'hostname': '0.0.0.0',
  'password': False,
  'pid': 9,
  'port': 8888,
  'root_dir': '/home/sagemaker-user',
  'secure': False,
  'sock': '',
  'token': '',
  'url': '
',
  'version': '1.23.2'}]
  
  
Posted 2 years ago

print(os.environ)
  
  
Posted 2 years ago

image

  
  
Posted 2 years ago

at least in 2018 it returned sessions! None

  
  
Posted 2 years ago

it does return kernels, just not sessions

  
  
Posted 2 years ago

if I add the base_url it's not found

  
  
Posted 2 years ago

So it's seemingly not the image, but maybe something to do with how Studio runs it as a kernel.

Yeah I think that for some reason it fails detecting this is actually jupyter noteboko (not really sure why), Thank you for double checking on the container !!

  
  
Posted 2 years ago
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