Is ther a way to see the contents of /tmp/conda_envaz1ne897.yml
? Seems to be deleted after the task is finihsed
Yes I think the difference is running conda install with arguments vs conda install with env file...
@<1523701868901961728:profile|ReassuredTiger98> if you use the latest RC! i sent and run with --debug
in the log you will see the full /tmp/conda_envaz1ne897.yml
content
Here it is copied from your log, do you want to see if this one works:
channels:
- defaults
- conda-forge
- pytorch
dependencies:
- blas~=1.0
- bzip2~=1.0.8
- ca-certificates~=2020.10.14
- certifi~=2020.6.20
- cloudpickle~=1.6.0
- cudatoolkit~=11.1.1
- cycler~=0.10.0
- cytoolz~=0.11.0
- dask-core~=2021.2.0
- decorator~=4.4.2
- ffmpeg~=4.3
- freetype~=2.10.4
- gmp~=6.2.1
- gnutls~=3.6.13
- imageio~=2.9.0
- jpeg~=9b.0
- kiwisolver~=1.3.1
- lame~=3.100
- lcms2~=2.11
- ld_impl_linux-64~=2.33.1
- libedit~=3.1.20191231
- libffi~=3.3
- libgcc-ng~=9.3.0
- libgfortran-ng~=7.3.0
- libiconv~=1.16
- libpng~=1.6.37
- libstdcxx-ng~=9.3.0
- libtiff~=4.1.0
- libuv~=1.41.0
- llvm-openmp~=11.0.1
- lz4-c~=1.9.3
- matplotlib-base~=3.3.4
- mkl~=2020.4
- mkl-service~=2.3.0
- mkl_fft~=1.3.0
- mkl_random~=1.2.0
- ncurses~=6.2
- nettle~=3.6
- networkx~=2.5
- ninja~=1.10.2
- numpy~=1.19.2
- numpy-base~=1.19.2
- olefile~=0.46
- openh264~=2.1.1
- openssl~=1.1.1j
- pyparsing~=2.4.7
- python~=3.7.10
- python-dateutil~=2.8.1
- python_abi~=3.7
- pytorch~=1.8.0
- pywavelets~=1.1.1
- pyyaml~=5.3.1
- readline~=8.1
- scikit-image~=0.17.2
- scipy~=1.6.1
- setuptools~=52.0.0
- six~=1.15.0
- sqlite~=3.33.0
- tifffile~=2020.10.1
- tk~=8.6.10
- toolz~=0.11.1
- torchaudio~=0.8.0
- torchvision~=0.9.0
- tornado~=6.1
- typing_extensions~=3.7.4.3
- wheel~=0.36.2
- xz~=5.2.5
- yaml~=0.2.5
- zlib~=1.2.11
- zstd~=1.4.9
What's the difference between the two env files?
Could you try to do:
CUDA_VERSION="11.1" clearml-agent ...
==> 2021-03-11 13:54:59 <==
# cmd: /home/tim/miniconda3/condabin/conda create --yes --mkdir --prefix /home/tim/.clearml/venvs-builds/3.8 python=3.8
# conda version: 4.9.2
+defaults/linux-64::_libgcc_mutex-0.1-main
+defaults/linux-64::ca-certificates-2021.1.19-h06a4308_1
+defaults/linux-64::certifi-2020.12.5-py38h06a4308_0
+defaults/linux-64::ld_impl_linux-64-2.33.1-h53a641e_7
+defaults/linux-64::libedit-3.1.20191231-h14c3975_1
+defaults/linux-64::libffi-3.3-he6710b0_2
+defaults/linux-64::libgcc-ng-9.1.0-hdf63c60_0
+defaults/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
+defaults/linux-64::ncurses-6.2-he6710b0_1
+defaults/linux-64::openssl-1.1.1j-h27cfd23_0
+defaults/linux-64::pip-21.0.1-py38h06a4308_0
+defaults/linux-64::python-3.8.8-hdb3f193_4
+defaults/linux-64::readline-8.1-h27cfd23_0
+defaults/linux-64::setuptools-52.0.0-py38h06a4308_0
+defaults/linux-64::sqlite-3.33.0-h62c20be_0
+defaults/linux-64::tk-8.6.10-hbc83047_0
+defaults/linux-64::xz-5.2.5-h7b6447c_0
+defaults/linux-64::zlib-1.2.11-h7b6447c_3
+defaults/noarch::wheel-0.36.2-pyhd3eb1b0_0
# update specs: ['python=3.8']
==> 2021-03-11 13:55:01 <==
# cmd: /home/tim/miniconda3/condabin/conda install -p /home/tim/.clearml/venvs-builds/3.8 -c defaults -c conda-forge -c pytorch cudatoolkit=11.1 --quiet --json
# conda version: 4.9.2
-defaults/linux-64::_libgcc_mutex-0.1-main
-defaults/linux-64::libgcc-ng-9.1.0-hdf63c60_0
-defaults/linux-64::libstdcxx-ng-9.1.0-hdf63c60_0
+conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
+conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
+conda-forge/linux-64::cudatoolkit-11.1.1-h6406543_8
+conda-forge/linux-64::libgcc-ng-9.3.0-h2828fa1_18
+conda-forge/linux-64::libgomp-9.3.0-h2828fa1_18
+conda-forge/linux-64::libstdcxx-ng-9.3.0-h6de172a_18
# update specs: ['cudatoolkit=11.1']
==> 2021-03-11 13:55:06 <==
# cmd: /home/tim/miniconda3/condabin/conda install -p /home/tim/.clearml/venvs-builds/3.8 -c defaults -c conda-forge -c pytorch pip<20.2 --quiet --json
# conda version: 4.9.2
-defaults/linux-64::pip-21.0.1-py38h06a4308_0
+conda-forge/linux-64::pip-20.0.2-py38_1
# update specs: ["pip[version='<20.2']"]
==> 2021-03-11 13:55:21 <==
# cmd: /home/tim/miniconda3/bin/conda-env update -p /home/tim/.clearml/venvs-builds/3.8 --file /tmp/conda_envu_x8060h.yml --quiet --json
# conda version: 4.9.2
-conda-forge/linux-64::_openmp_mutex-4.5-1_gnu
-defaults/linux-64::ca-certificates-2021.1.19-h06a4308_1
+conda-forge/linux-64::_openmp_mutex-4.5-1_llvm
+conda-forge/linux-64::ffmpeg-4.3.1-h03821db_2
+conda-forge/linux-64::gnutls-3.6.13-h85f3911_1
+conda-forge/linux-64::libblas-3.9.0-8_mkl
+conda-forge/linux-64::libiconv-1.16-h516909a_0
+conda-forge/linux-64::libprotobuf-3.15.5-h780b84a_0
+conda-forge/linux-64::libuv-1.41.0-h7f98852_0
+conda-forge/linux-64::llvm-openmp-11.0.1-h4bd325d_0
+conda-forge/linux-64::mkl-2020.4-h726a3e6_304
+conda-forge/linux-64::mkl_random-1.2.0-py38hc5bc63f_1
+conda-forge/linux-64::nettle-3.6-he412f7d_0
+conda-forge/linux-64::openh264-2.1.1-h780b84a_0
+conda-forge/linux-64::python_abi-3.8-1_cp38
+conda-forge/linux-64::pytorch-1.8.0-cpu_py38he614459_0
+conda-forge/linux-64::sleef-3.5.1-h7f98852_1
+conda-forge/linux-64::zstd-1.4.9-ha95c52a_0
+defaults/linux-64::blas-1.0-mkl
+defaults/linux-64::bzip2-1.0.8-h7b6447c_0
+defaults/linux-64::ca-certificates-2020.12.8-h06a4308_1
+defaults/linux-64::cffi-1.14.5-py38h261ae71_0
+defaults/linux-64::freetype-2.10.4-h5ab3b9f_0
+defaults/linux-64::future-0.18.2-py38_1
+defaults/linux-64::gmp-6.2.1-h2531618_2
+defaults/linux-64::jpeg-9b-h024ee3a_2
+defaults/linux-64::lame-3.100-h7b6447c_0
+defaults/linux-64::lcms2-2.11-h396b838_0
+defaults/linux-64::libpng-1.6.37-hbc83047_0
+defaults/linux-64::libtiff-4.1.0-h2733197_1
+defaults/linux-64::lz4-c-1.9.3-h2531618_0
+defaults/linux-64::mkl-service-2.3.0-py38he904b0f_0
+defaults/linux-64::mkl_fft-1.3.0-py38h54f3939_0
+defaults/linux-64::ninja-1.10.2-py38hff7bd54_0
+defaults/linux-64::numpy-1.19.2-py38h54aff64_0
+defaults/linux-64::numpy-base-1.19.2-py38hfa32c7d_0
+defaults/linux-64::pillow-8.1.2-py38he98fc37_0
+defaults/linux-64::six-1.15.0-py38h06a4308_0
+defaults/linux-64::x264-1!152.20180806-h7b6447c_0
+defaults/noarch::olefile-0.46-py_0
+defaults/noarch::pycparser-2.20-py_2
+defaults/noarch::typing_extensions-3.7.4.3-pyha847dfd_0
+pytorch/linux-64::torchaudio-0.8.0-py38
+pytorch/linux-64::torchvision-0.9.0-py38_cu111
# update specs: ['ld_impl_linux-64~=2.33.1', 'libpng~=1.6.37', 'ninja~=1.10.2', 'pytorch~=1.8.0', 'zstd~=1.4.9', 'gmp~=6.2.1', 'python~=3.8.8', 'torchaudio~=0.8.0', 'libtiff~=4.1.0', 'mkl-service~=2.3.0', 'typing_extensions~=3.7.4.3', 'llvm-openmp~=11.0.1', 'python_abi~=3.8', 'readline~=8.1', 'jpeg~=9b.0', 'libedit~=3.1.20191231', 'mkl_random~=1.2.0', 'numpy~=1.19.2', 'openssl~=1.1.1j', 'pillow~=8.1.2', 'blas~=1.0', 'setuptools~=52.0.0', 'tk~=8.6.10', 'ffmpeg~=4.3', 'lz4-c~=1.9.3', 'xz~=5.2.5', 'ncurses~=6.2', 'lame~=3.100', 'libgcc-ng~=9.3.0', 'libffi~=3.3', 'six~=1.15.0', 'certifi~=2020.12.5', 'libuv~=1.41.0', 'gnutls~=3.6.13', 'torchvision~=0.9.0', 'sqlite~=3.33.0', 'libstdcxx-ng~=9.3.0', 'olefile~=0.46', 'openh264~=2.1.1', 'libiconv~=1.16', 'ca-certificates~=2020.12.5', 'cudatoolkit~=11.1.1', 'mkl_fft~=1.3.0', 'freetype~=2.10.4', 'numpy-base~=1.19.2', 'wheel~=0.36.2', 'mkl~=2020.4', 'nettle~=3.6', 'lcms2~=2.11', 'bzip2~=1.0.8', 'zlib~=1.2.11']
Hi @<1523701868901961728:profile|ReassuredTiger98>
This should have worked, and seems like conda is not fetching the correct pytorch version (even though the conda env contains the cuda version they specify)
Let's try something, reset the Task, then edit the "Installed packages" and add:
cudatoolkit==11.1.1
Then try again.
Let's see what we get.
(The idea, is that I think conda forgets it just install cudatoolkit and assumes the env is for CPU)
name: core
channels:
- pytorch
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1
- _openmp_mutex=4.5
- blas=1.0
- bzip2=1.0.8
- ca-certificates=2020.12.5
- certifi=2020.12.5
- cudatoolkit=11.1.1
- ffmpeg=4.3
- freetype=2.10.4
- gmp=6.2.1
- gnutls=3.6.13
- jpeg=9b
- lame=3.100
- lcms2=2.11
- ld_impl_linux-64=2.33.1
- libedit=3.1.20191231
- libffi=3.3
- libgcc-ng=9.3.0
- libiconv=1.16
- libpng=1.6.37
- libstdcxx-ng=9.3.0
- libtiff=4.1.0
- libuv=1.41.0
- llvm-openmp=11.0.1
- lz4-c=1.9.3
- mkl=2020.4
- mkl-service=2.3.0
- mkl_fft=1.3.0
- mkl_random=1.2.0
- ncurses=6.2
- nettle=3.6
- ninja=1.10.2
- numpy=1.19.2
- numpy-base=1.19.2
- olefile=0.46
- openh264=2.1.1
- openssl=1.1.1j
- pillow=8.1.2
- pip=21.0.1
- python=3.8.8
- python_abi=3.8
- pytorch=1.8.0
- readline=8.1
- setuptools=52.0.0
- six=1.15.0
- sqlite=3.33.0
- tk=8.6.10
- torchaudio=0.8.0
- torchvision=0.9.0
- typing_extensions=3.7.4.3
- wheel=0.36.2
- xz=5.2.5
- zlib=1.2.11
- zstd=1.4.9
- pip:
- attrs==20.3.0
- clearml==0.17.4
- furl==2.1.0
- humanfriendly==9.1
- jsonschema==3.2.0
- orderedmultidict==1.0.1
- pathlib2==2.3.5
- psutil==5.8.0
- pyjwt==2.0.1
- pyrsistent==0.17.3
- pyyaml==5.4.1
- requests-file==1.5.1
Okay this seems correct:
pytorch=1.8.0=py3.7_cuda11.1_cudnn8.0.5_0
I can't seem to find what's the diff between the two.
Give me a second let me check if I can reproduce it somehow.
So to further debug I need to somehow access /tmp/conda_envaz1ne897.yml
# Python 3.7.10 (default, Feb 26 2021, 18:47:35) [GCC 7.3.0]
aiostream==0.4.2
attrs==20.3.0
clearml==0.17.4
dm-control==0.0.355168290
dm-env==1.4
furl==2.1.0
future==0.18.2
glfw==2.1.0
gym==0.18.0
humanfriendly==9.1
imageio-ffmpeg==0.4.3
jsonschema==3.2.0
labmaze==1.0.3
lxml==4.6.2
moviepy==1.0.3
orderedmultidict==1.0.1
pathlib2==2.3.5
pillow==7.2.0
proglog==0.1.9
psutil==5.8.0
pybullet==3.0.9
pygame==2.0.1
pyglet==1.5.0
pyjwt==2.0.1
pyrsistent==0.17.3
requests-file==1.5.1
tensorboard==2.4.1
tensorboardx==2.1
# Conda Packages
blas==1.0
bzip2==1.0.8
ca-certificates==2020.10.14
certifi==2020.6.20
cloudpickle==1.6.0
cudatoolkit==11.1.1
cycler==0.10.0
cytoolz==0.11.0
dask-core==2021.2.0
decorator==4.4.2
ffmpeg==4.3
freetype==2.10.4
gmp==6.2.1
gnutls==3.6.13
imageio==2.9.0
jpeg==9b
kiwisolver==1.3.1
lame==3.100
lcms2==2.11
ld_impl_linux-64==2.33.1
libedit==3.1.20191231
libffi==3.3
libgcc-ng==9.3.0
libgfortran-ng==7.3.0
libiconv==1.16
libpng==1.6.37
libstdcxx-ng==9.3.0
libtiff==4.1.0
libuv==1.41.0
llvm-openmp==11.0.1
lz4-c==1.9.3
matplotlib-base==3.3.4
mkl==2020.4
mkl-service==2.3.0
mkl_fft==1.3.0
mkl_random==1.2.0
ncurses==6.2
nettle==3.6
networkx==2.5
ninja==1.10.2
numpy==1.19.2
numpy-base==1.19.2
olefile==0.46
openh264==2.1.1
openssl==1.1.1j
pip==21.0.1
pyparsing==2.4.7
python==3.7.10
python-dateutil==2.8.1
python_abi==3.7
torch==1.8.0
pywavelets==1.1.1
pyyaml==5.3.1
readline==8.1
scikit-image==0.17.2
scipy==1.6.1
setuptools==52.0.0
six==1.15.0
sqlite==3.33.0
tifffile==2020.10.1
tk==8.6.10
toolz==0.11.1
torchaudio==0.8.0
torchvision==0.9.0
tornado==6.1
typing_extensions==3.7.4.3
wheel==0.36.2
xz==5.2.5
yaml==0.2.5
zlib==1.2.11
zstd==1.4.9
Just tried: also works with 0.17.2
Great!
Okay this is very close to what the agent is building:
Could you start a new conda env,
then install cudatoolkit=11.1
then run:
conda env update -p <conda_env_path_here> --file the_env_yaml.yml
Nvm, I took a look at conda history and there I see it
I will try again tomorrow. It s getting late! Thank you for helping so far!
Installed miniconda finally, now trying to run the task