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I Am Using Clearml Pro And Pretty Regularly I Will Restart An Experiment And Nothing Will Get Logged To Clearml. It Shows The Experiment Running (For Days) And It'S Running Fine On The Pc But No Scalers Or Debug Samples Are Shown. How Do We Troubleshoot T

I am using ClearML Pro and pretty regularly I will restart an experiment and nothing will get logged to ClearML. It shows the experiment running (for days) and it's running fine on the PC but no scalers or debug samples are shown.
How do we troubleshoot this?

  
  
Posted 8 months ago
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Answers 69


I'm not sure how to even troubleshoot this.

  
  
Posted 8 months ago

It seems similar to this None is it possible saving too many model weights causes metric logging thread to die?

  
  
Posted 8 months ago

My bad, if you set auto_connect_streams to false, you basically disable the console logging... Please see the documentation:

auto_connect_streams (Union[bool, Mapping[str, bool]]) – Control the automatic logging of stdout and stderr.
  
  
Posted 8 months ago

Another thing I notice is that aborting the experiment does not work when this is happening. It just continues to run

  
  
Posted 7 months ago

That makes sense... If you turn auto_connect_streams to false this mean that auto reporting will be disabled as per the documentation.. If you turn it to True then logging should resume.

  
  
Posted 8 months ago

Is this just the console output while training?

  
  
Posted 8 months ago

So I was able to repeat the same behavior on a machine running this example None

by adding the following callback

class TensorBoardImage(TensorBoard):
    @staticmethod
    def make_image(tensor):
        from PIL import Image
        import io
        tensor = np.stack((tensor, tensor, tensor), axis=2)
        height, width, channels = tensor.shape
        image = Image.fromarray(tensor)
        output = io.BytesIO()
        image.save(output, format='PNG')
        image_string = output.getvalue()
        output.close()
        return tf.Summary.Image(height=height,
                                width=width,
                                colorspace=channels,
                                encoded_image_string=image_string)

    def on_epoch_end(self, epoch, logs=None):
        if logs is None:
            logs = {}
        super(TensorBoardImage, self).on_epoch_end(epoch, logs)
        images = self.validation_data[0]  # 0 - data; 1 - labels
        img = (255 * images[0].reshape(28, 28)).astype('uint8')

        image = self.make_image(img)
        summary = tf.Summary(value=[tf.Summary.Value(tag='image', image=image)])
        self.writer.add_summary(summary, epoch)

So it seems like there is some bug in the how ClearML is logging tensorbaord images that causes everything to fail

  
  
Posted 7 months ago

The same training works sometimes. But I'm not sure how to troubleshoot when it stops logging the metrics

  
  
Posted 8 months ago

Okay I will do another run to capture the console output. We currently set auto_connect_streams to False to reduce the number of API calls. So there isn't really anything in the ClearML task page console section

  
  
Posted 8 months ago

We are running the same code on multiple machines and it just randomly happens. Currently we are having the issue on 1 out of 4

  
  
Posted 8 months ago

Not sure if this is helpful but this is what I get when I cntrl-c out of the hung script

^C^CException ignored in atexit callback: <bound method Reporter._handle_program_exit of <clearml.backend_interface.metrics.reporter.Reporter object at 0x70fd8b7ff1c0>>
Event reporting sub-process lost, switching to thread based reporting
Traceback (most recent call last):
  File "/home/richard/.virtualenvs/temp_clearml/lib/python3.10/site-packages/clearml/backend_interface/metrics/reporter.py", line 317, in _handle_program_exit
    self.wait_for_events()
  File "/home/richard/.virtualenvs/temp_clearml/lib/python3.10/site-packages/clearml/backend_interface/metrics/reporter.py", line 337, in wait_for_events
    return report_service.wait_for_events(timeout=timeout)
  File "/home/richard/.virtualenvs/temp_clearml/lib/python3.10/site-packages/clearml/backend_interface/metrics/reporter.py", line 129, in wait_for_events
    if self._empty_state_event.wait(timeout=1.0):
  File "/home/richard/.virtualenvs/temp_clearml/lib/python3.10/site-packages/clearml/utilities/process/mp.py", line 445, in wait
    return self._event.wait(timeout=timeout)
  File "/usr/lib/python3.10/multiprocessing/synchronize.py", line 349, in wait
    self._cond.wait(timeout)
  File "/usr/lib/python3.10/multiprocessing/synchronize.py", line 261, in wait
    return self._wait_semaphore.acquire(True, timeout)
KeyboardInterrupt: 
  
  
Posted 7 months ago

Running clearml_example.py in None reproduces the issue

  
  
Posted 7 months ago

If you remove any reference of ClearML from the code on that machine, does it still hang?

  
  
Posted 7 months ago

Hi ThankfulClams64 ! What tensorflow/keras version are you using? I noticed that in the TensorBoardImage you are using tf.Summary which no longer exists since tensorflow 2.2.3 , which I believe is too old to work with tesorboard==2.16.2.
Also, how are you stopping and starting the experiments? When starting an experiment, are you resuming training? In that case, you might want to consider setting the initial iteration to the last iteration your program reported

  
  
Posted 7 months ago

Yes it is logging to the console. The script does hang whenever it completes all the epochs when it is having the issue.

  
  
Posted 7 months ago

Yes tensorboard. It is still logging the tensorboard scalers and images. It just doesn't log the console output

  
  
Posted 8 months ago

Do you also see the same in the terminal itself on the machine?

  
  
Posted 7 months ago

I just created a new virtual environment and the problem persists. There are only two dependencies clearml and tensorflow. CostlyOstrich36 what logs are you referring to?

  
  
Posted 7 months ago

Yea I am fine not having the console logging. My issues is the scalers and debug images occasionally don't record to ClearML

  
  
Posted 8 months ago

Yes I see it in the terminal on the machine

  
  
Posted 7 months ago

Can you share any of the logs?

  
  
Posted 8 months ago

Just to make sure, did the logging to the clearml server work previously and stoped working at some point?

  
  
Posted 8 months ago

There is clearly some connection to the ClearML server as it remains "running" the entire training session but there are no metrics or debug samples. And I see nothing in the logs to indicate there is an issue

  
  
Posted 8 months ago

When I try to abort an experiment. I get this in the log

clearml.Task - WARNING - ### TASK STOPPED - USER ABORTED - STATUS CHANGED ###

but it does not stop anything it just continues to run

  
  
Posted 7 months ago

When the script is hung at the end the experiment says failed in ClearML

  
  
Posted 7 months ago

Not sure why that is related to saving images

  
  
Posted 7 months ago

I am on 1.16.2

    task = Task.init(project_name=model_config['ClearML']['project_name'],
                     task_name=model_config['ClearML']['task_name'],
                     continue_last_task=False,
                     auto_connect_streams=True)
  
  
Posted 8 months ago

What happens if you're running the reporting example from the ClearML github repository?

  
  
Posted 8 months ago

task.connect(model_config)
task.connect(DataAugConfig)

If these are separate dictionaries , you should probably use two sections:

    task.connect(model_config, name="model config")
    task.connect(DataAugConfig, name="data aug")

It is still getting stuck.
I notice that one of the scalars that gets logged early is logging the epoch while the remaining scalars seem to be iterations because the iteration value is 1355 instead of 26

wait so you are seeing Some scalars ?

while the remaining scalars seem to be iterations because the iteration value is 1355 instead of 26

what are you seeing in your TB?

  
  
Posted 8 months ago

Thanks ThankfulClams64 having a code that can reproduce it is exactly what we need.
One thing I might have missed and is very important , what is your tensorboard package version?

  
  
Posted 7 months ago
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