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I Am Using Clearml Pro And Pretty Regularly I Will Restart An Experiment And Nothing Will Get Logged To Clearml. It Shows The Experiment Running (For Days) And It'S Running Fine On The Pc But No Scalers Or Debug Samples Are Shown. How Do We Troubleshoot T

I am using ClearML Pro and pretty regularly I will restart an experiment and nothing will get logged to ClearML. It shows the experiment running (for days) and it's running fine on the PC but no scalers or debug samples are shown.
How do we troubleshoot this?

  
  
Posted one year ago
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Answers 69


It is still getting stuck. I think the issue might have something to do with the iterations versus epochs. I notice that one of the scalars that gets logged early is logging the epoch while the remaining scalars seem to be iterations because the iteration value is 1355 instead of 26

  
  
Posted one year ago

task.connect(model_config)
task.connect(DataAugConfig)

If these are separate dictionaries , you should probably use two sections:

    task.connect(model_config, name="model config")
    task.connect(DataAugConfig, name="data aug")

It is still getting stuck.
I notice that one of the scalars that gets logged early is logging the epoch while the remaining scalars seem to be iterations because the iteration value is 1355 instead of 26

wait so you are seeing Some scalars ?

while the remaining scalars seem to be iterations because the iteration value is 1355 instead of 26

what are you seeing in your TB?

  
  
Posted one year ago

So I was able to repeat the same behavior on a machine running this example None

by adding the following callback

class TensorBoardImage(TensorBoard):
    @staticmethod
    def make_image(tensor):
        from PIL import Image
        import io
        tensor = np.stack((tensor, tensor, tensor), axis=2)
        height, width, channels = tensor.shape
        image = Image.fromarray(tensor)
        output = io.BytesIO()
        image.save(output, format='PNG')
        image_string = output.getvalue()
        output.close()
        return tf.Summary.Image(height=height,
                                width=width,
                                colorspace=channels,
                                encoded_image_string=image_string)

    def on_epoch_end(self, epoch, logs=None):
        if logs is None:
            logs = {}
        super(TensorBoardImage, self).on_epoch_end(epoch, logs)
        images = self.validation_data[0]  # 0 - data; 1 - labels
        img = (255 * images[0].reshape(28, 28)).astype('uint8')

        image = self.make_image(img)
        summary = tf.Summary(value=[tf.Summary.Value(tag='image', image=image)])
        self.writer.add_summary(summary, epoch)

So it seems like there is some bug in the how ClearML is logging tensorbaord images that causes everything to fail

  
  
Posted one year ago

I am on 1.16.2

    task = Task.init(project_name=model_config['ClearML']['project_name'],
                     task_name=model_config['ClearML']['task_name'],
                     continue_last_task=False,
                     auto_connect_streams=True)
  
  
Posted one year ago

I do have uncommitted code changes. I can try to check at some point if it would not have the problem without them. It seems like it could be repeated just by making a git repo with that script and adding a very large file. If I can repeat it is it best to open an issue in GitHub?

  
  
Posted one year ago

Hi we are currently having the issue. There is nothing in the console regarding ClearML besides

ClearML Task: created new task id=0174d5b9d7164f47bd10484fd268e3ff
======> WARNING! Git diff too large to store (3611kb), skipping uncommitted changes <======
ClearML results page: 

The console logs continue to come in put no scalers or debug images show up.

  
  
Posted one year ago

Another thing I notice is that aborting the experiment does not work when this is happening. It just continues to run

  
  
Posted one year ago

My bad, if you set auto_connect_streams to false, you basically disable the console logging... Please see the documentation:

auto_connect_streams (Union[bool, Mapping[str, bool]]) – Control the automatic logging of stdout and stderr.
  
  
Posted one year ago

I'm not sure if it still reports logs. But it will continue running on the machine

  
  
Posted one year ago

@<1719524641879363584:profile|ThankfulClams64> you could try using the compare function in the UI to compare the experiments on the machine the scalars are not reported properly and the experiments on a machine that runs the experiments properly. I suggest then replicating the environment exactly on the problematic machine. None

  
  
Posted one year ago

Then we also connect two dictionaries for configs

    task.connect(model_config)
    task.connect(DataAugConfig)
  
  
Posted one year ago

Yes tensorboard. It is still logging the tensorboard scalers and images. It just doesn't log the console output

  
  
Posted one year ago

Is this just the console output while training?

  
  
Posted one year ago

STATUS MESSAGE: N/A
STATUS REASON: Signal None

  
  
Posted one year ago

Does any exit code appear? What is the status message and status reason in the 'INFO' section?

  
  
Posted one year ago

Hi @<1719524641879363584:profile|ThankfulClams64> , stopping all processes should do that, there is no programmatic way of doing that specifically. Did you try calling task.close() for all tasks you're using?

  
  
Posted one year ago

When the script is hung at the end the experiment says failed in ClearML

  
  
Posted one year ago

Running clearml_example.py in None reproduces the issue

  
  
Posted one year ago

Hi @<1719524641879363584:profile|ThankfulClams64>

I am using ClearML Pro and pretty regularly I will restart an experiment and nothing will get logged to ClearML.
I use ClearML with pytorch 1.7.1, pytorch-lightning 1.2.2 and Tensorboard auto
All ClearML has the latest stable updates. (clearml 1.7.4, clearml-agent 1.7.2)

Is this still happening with the latest clearml ( clearml==1.16.3rc2 ) ?
What is the TB version?
I remember a fix regrading lightining support
Also just making sure, are you using the default lightning TB logger ?
How are you initializing the Task.init (i.e. could you copy here the code?)

  
  
Posted one year ago

I'll update my clearml version. Unfortunately I do not have a small code snippet and it is not always repeatable. Is there some additional logging that can be turned on?

  
  
Posted one year ago

Is there someway to kill all connections of a machine to the ClearML server this does seem to be related to restarting a task / running a new task quickly after a task fails or is aborted

  
  
Posted one year ago

Console output and also what you get on the ClearML task page under the console section

  
  
Posted one year ago

I am using 1.15.0. Yes I can try with auto_connect_streams set to True I believe I will still have the issue

  
  
Posted one year ago

@<1719524641879363584:profile|ThankfulClams64> , are logs showing up without issue on the 'problematic' machine?

  
  
Posted one year ago

Not sure why that is related to saving images

  
  
Posted one year ago

I found that setting store_uncommitted_code_diff: false instead of true seems to fix the issue

  
  
Posted one year ago

I am still having this issue. An update is that the "abort" does not work. Even though the state is correctly tracked in ClearML when I try to abort the experiment through the UI it says it does it but the experiment remains running on the computer.

  
  
Posted one year ago

Yes I see it in the terminal on the machine

  
  
Posted one year ago

It was working for me. Anyway I modified the callback. Attached is the script that has the issue for me whenever I add random_image_logger to the callbacks It only logs some of the scalars for 1 epoch. It then is stuck and never recovers. When I remove random_image_logger the scalars are correctly logged. Again this only on 1 computer, other computers we have logging work perfectly fine

  
  
Posted one year ago

This was on the same machine I am having issues with it logs scalars correctly using the example code, but when I add in that callback which just logs a random image to tensorboard I don't get any scalars logged

  
  
Posted one year ago
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